New Topic: Single Cell Analysis!

Author(s)

Posted on: 18 November 2022

Single-cell analysis now has it’s own topic! These tutorials were previously part of the transcriptomics topic, but due to the amazing efforts byWendi Bacon,Mehmet Tekmanand others, we now have so many single-cell analysis tutorials that they deserve their own dedicated topic! From introductory slides and practicals, to case study tutorials generating cell clusters and trajectories from raw sequencing files, and even a growing subtopic of smaller tips and tricks for adapting analysis to user needs, the single cell topic either has what you need or is working on it. Come learn or get involved!

Exciting new single-cell tutorials are also planned to be added in the near future, so keep your eyes on this hot topic!

View Material

Pretty dots of different colours combined into two cell cluster plots on the sides. In the middle, a split violin plot showing the expression of unknown genes in blue on one side and the expression of the genes in an opposing sample in orange alongside. Snuck in between these three important plots is a PhD comic of data showing no trend, with the chat box “Hmm… I think there’s a clear trend happening here.”

Recent News

See all news

New Galaxy training: Genome-wide alternative splicing analysis

15 May 2023 new tutorial

The GTN hosts a new training for analyzing alternative splicing at genome-wide scale!

BY-COVID and RO-Crate collaboration brings new topic: FAIR Data, Workflows & More

11 May 2023 new topic new feature

As part of the BY-COVID project, the RO-Crate team and BY-COVID members have brought several RO-Crate related tutorials into the Galaxy Training Network, under a brand new {FAIR} topic!

New Feature: my.galaxy.training

20 April 2023 new feature gtn

The GTN has set up a very simple “redirection” service based on my.home-assistant.io which Helena discovered after reading some Home Assistant documentation and saw a really neat link which led to her own internal home assistant.

New Feature: Persistent URLs (PURLs) / Shortlinks

19 April 2023 new feature gtn

The GTN has added persistent URL identifiers for our tutorials, slides, and FAQs. Using the gxy.io service, we have reserved GTN namespace for our persistent URLs. These work similarly to DOIs in that they will always point to a specific training material.

New Feature: GTN Rdoc

19 April 2023 new feature gtn

The internal functions of the GTN have, in the past, not been very well documented. Now we have started the process of fully documenting the functions and modules available to GTN developers.