Workflows

To use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to the workflow which can be used in the Galaxy form to import workflows.

Workflow Updated Import Has Tests Tested License Creators
Galaxy-Workflow-Assembly_polishing.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Assembly_with_Flye.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Assess_genome_quality.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Combined_workflows_for_large_genome_assembly.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Data_QC.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Racon_polish_with_Illumina_reads_x2.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Racon_polish_with_long_reads_x4.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-Trim_and_filter_reads.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme
Galaxy-Workflow-kmer_counting.ga Feb 17, 2023 Launch in Tutorial Mode ?
Import to UseGalaxy.eu
Import to UseGalaxy.org
Import to another server (β‰₯23.0+ only!)
❌ ❌ None Specified, defaults to CC-BY-4.0 Anna Syme

Importing into Galaxy

Below are the instructions for importing these workflows directly into your Galaxy server of choice to start using them!
Hands-on: Importing a workflow
  • Click on Workflow on the top menu bar of Galaxy. You will see a list of all your workflows.
  • Click on galaxy-upload Import at the top-right of the screen
  • Provide your workflow
    • Option 1: Paste the URL of the workflow into the box labelled β€œArchived Workflow URL”
    • Option 2: Upload the workflow file in the box labelled β€œArchived Workflow File”
  • Click the Import workflow button