Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Environments
work-in-progress
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

Maintainers

This material is maintained by:

AvatarGildas Le Corguilléorcid logoAvatarBérénice Batutorcid logoAvatarHelena Rasche

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

AvatarHervé MénagerAvatarStéphanie Legrasorcid logoAvatarClemens BlankAvatarRoss Lazarusorcid logoAvatarAnthony BretaudeauAvatarClare Sloggettorcid logoAvatarNicola SoranzoAvatarDave B.AvatarMatthias BerntAvatarCyril MonjeaudAvatarAysam GuerlerAvatarDannon Bakerorcid logoAvatarMartin ČechAvatarErik Schillorcid logoAvatarJohn DavisAvatarLoraine Guéguenorcid logoAvatarSaskia Hiltemannorcid logoAvatarJohn Chiltonorcid logoAvatarGianmauro CuccuruAvatarGildas Le CorguilléAvatarSimon BrayAvatarAssunta DeSantoAvatarLain PavotAvatarYouri HoogstrateAvatarEstelle Anceletorcid logoAvatarBjörn Grüningorcid logoAvatarYvan Le Brasorcid logoAvatarBérénice BatutAvatarNitesh Turagaorcid logoAvatarHelena Rascheorcid logoAvatarAlex Ostrovskyorcid logoAvatarCameron Hyde